PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G03280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1077aa    MW: 119585 Da    PI: 6.6625
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G03280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.9e-21149250199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  OGLUM02G03280.1 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 238
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OGLUM02G03280.1 239 EKHQLLLGIRRA 250
                      788889999997 PP

2Auxin_resp117.79.8e-39275358183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OGLUM02G03280.1 275 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358
                      79*********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
SuperFamilySSF1019361.24E-41138278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-39141264IPR015300DNA-binding pseudobarrel domain
CDDcd100178.46E-18148249No hitNo description
PfamPF023621.0E-18149250IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912149251IPR003340B3 DNA binding domain
SMARTSM010196.7E-21149251IPR003340B3 DNA binding domain
PfamPF065071.4E-33275358IPR010525Auxin response factor
PROSITE profilePS5174525.38310091077IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MASMKQQQTP ASSAVTAAAA AASSSATAAV AACEGERKAA AINSELWHAC AGPLVSLPPV  60
GSLVVYFPQG HSEQVAASMQ KDVDAHVPSY PNLPSKLICL LHGVNLHADP DTDEVYAQMT  120
LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  180
SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK  240
HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI  300
PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG  360
WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE  420
EVCIKDTQNQ NSTAPGLSLV QWMNMNRQQS SSLANTAAQS EYLQALGNPA VQNLAADELA  480
RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR  540
QQNSIQVIPL SQAQSNLVQA QVIIQNQMQQ QKPSPTQNPQ RINGQRLLLS HQQQDQNLQL  600
QQQLLLQQKQ QLQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL  660
MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ  720
EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PTTGGAMIIS GATQSVVTEE MPSCSTSPST  780
ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVIAT PLMTKELPKP NNNVKQSVVN  840
SKLPNVAPGP QNCINNALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL  900
PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD  960
ALQEISTSMV SQSFGQSDMA FNSIDSTIND GAFLNKNSWP TAPLLQRMRT FTKVYKRGAV  1020
GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1673537945388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0PREDICTED: auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9YM670.0A0A0D9YM67_9ORYZ; Auxin response factor
STRINGORGLA02G0031900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19